<?xml version="1.0" encoding="UTF-8"?>
<metadata xmlns="http://linux.duke.edu/metadata/common" xmlns:rpm="http://linux.duke.edu/metadata/rpm" packages="8">
<package type="rpm">
  <name>AlignPrimer</name>
  <arch>src</arch>
  <version epoch="0" ver="1.0" rel="4.19"/>
  <checksum type="sha256" pkgid="YES">6fc5d91fd1474908425a973b8c497b82b1cde4423682bbea80ae22454e8ec195</checksum>
  <summary>Dynamic programming alignment of PCR primers to genomes</summary>
  <description>Dynamic programming alignment of PCR primers to genomes.</description>
  <packager></packager>
  <url>https://sites.google.com/site/geraldweberufmg/AlignPrimer</url>
  <time file="1640974251" build="1640974248"/>
  <size package="52205" installed="46959" archive="47348"/>
  <location href="src/AlignPrimer-1.0-4.19.src.rpm"/>
  <format>
    <rpm:license>GPL-3.0</rpm:license>
    <rpm:vendor>obs://build.opensuse.org/home:drgweber</rpm:vendor>
    <rpm:group>Productivity/Scientific/Physics</rpm:group>
    <rpm:buildhost>build84</rpm:buildhost>
    <rpm:sourcerpm></rpm:sourcerpm>
    <rpm:header-range start="4664" end="6516"/>
    <rpm:requires>
      <rpm:entry name="boost-devel"/>
      <rpm:entry name="gcc-c++"/>
      <rpm:entry name="zlib-devel"/>
    </rpm:requires>
  </format>
</package>
<package type="rpm">
  <name>AlignPrimer</name>
  <arch>x86_64</arch>
  <version epoch="0" ver="1.0" rel="4.19"/>
  <checksum type="sha256" pkgid="YES">30e1651a1daa884b5cbff7d4e30231f24d6841376f775ef14bc31793422681d1</checksum>
  <summary>Dynamic programming alignment of PCR primers to genomes</summary>
  <description>Dynamic programming alignment of PCR primers to genomes.</description>
  <packager></packager>
  <url>https://sites.google.com/site/geraldweberufmg/AlignPrimer</url>
  <time file="1640974251" build="1640974248"/>
  <size package="133724" installed="364288" archive="365020"/>
  <location href="x86_64/AlignPrimer-1.0-4.19.x86_64.rpm"/>
  <format>
    <rpm:license>GPL-3.0</rpm:license>
    <rpm:vendor>obs://build.opensuse.org/home:drgweber</rpm:vendor>
    <rpm:group>Productivity/Scientific/Physics</rpm:group>
    <rpm:buildhost>build84</rpm:buildhost>
    <rpm:sourcerpm>AlignPrimer-1.0-4.19.src.rpm</rpm:sourcerpm>
    <rpm:header-range start="4664" end="8368"/>
    <rpm:provides>
      <rpm:entry name="AlignPrimer" flags="EQ" epoch="0" ver="1.0" rel="4.19"/>
      <rpm:entry name="AlignPrimer(x86-64)" flags="EQ" epoch="0" ver="1.0" rel="4.19"/>
    </rpm:provides>
    <rpm:requires>
      <rpm:entry name="libboost_filesystem.so.1.66.0()(64bit)"/>
      <rpm:entry name="libboost_regex.so.1.66.0()(64bit)"/>
      <rpm:entry name="libboost_system.so.1.66.0()(64bit)"/>
      <rpm:entry name="libgcc_s.so.1()(64bit)"/>
      <rpm:entry name="libgcc_s.so.1(GCC_3.0)(64bit)"/>
      <rpm:entry name="libm.so.6()(64bit)"/>
      <rpm:entry name="libm.so.6(GLIBC_2.2.5)(64bit)"/>
      <rpm:entry name="libstdc++.so.6()(64bit)"/>
      <rpm:entry name="libstdc++.so.6(CXXABI_1.3)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4.11)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4.15)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4.20)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4.21)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4.9)(64bit)"/>
      <rpm:entry name="libz.so.1()(64bit)"/>
      <rpm:entry name="rtld(GNU_HASH)"/>
      <rpm:entry name="zlib"/>
      <rpm:entry name="libc.so.6(GLIBC_2.14)(64bit)"/>
    </rpm:requires>
    <file>/usr/bin/align_primer</file>
  </format>
</package>
<package type="rpm">
  <name>AlignPrimer-debuginfo</name>
  <arch>x86_64</arch>
  <version epoch="0" ver="1.0" rel="4.19"/>
  <checksum type="sha256" pkgid="YES">2f1defba26684098c4928380e3b378197ac3fb8d157e547d8bbab48060f493ec</checksum>
  <summary>Debug information for package AlignPrimer</summary>
  <description>This package provides debug information for package AlignPrimer.
Debug information is useful when developing applications that use this
package or when debugging this package.</description>
  <packager></packager>
  <url>https://sites.google.com/site/geraldweberufmg/AlignPrimer</url>
  <time file="1640974251" build="1640974248"/>
  <size package="1706588" installed="9762096" archive="9763560"/>
  <location href="x86_64/AlignPrimer-debuginfo-1.0-4.19.x86_64.rpm"/>
  <format>
    <rpm:license>GPL-3.0</rpm:license>
    <rpm:vendor>obs://build.opensuse.org/home:drgweber</rpm:vendor>
    <rpm:group>Development/Debug</rpm:group>
    <rpm:buildhost>build84</rpm:buildhost>
    <rpm:sourcerpm>AlignPrimer-1.0-4.19.src.rpm</rpm:sourcerpm>
    <rpm:header-range start="4664" end="8352"/>
    <rpm:provides>
      <rpm:entry name="AlignPrimer-debuginfo" flags="EQ" epoch="0" ver="1.0" rel="4.19"/>
      <rpm:entry name="AlignPrimer-debuginfo(x86-64)" flags="EQ" epoch="0" ver="1.0" rel="4.19"/>
      <rpm:entry name="debuginfo(build-id)" flags="EQ" epoch="0" ver="f75fe0c63aa08b8ea19ed5fa2ccadee3febdcbe1"/>
    </rpm:provides>
    <rpm:recommends>
      <rpm:entry name="AlignPrimer-debugsource(x86-64)" flags="EQ" epoch="0" ver="1.0" rel="4.19"/>
    </rpm:recommends>
    <file>/usr/lib/debug/usr/bin/align_primer-1.0-4.19.x86_64.debug</file>
  </format>
</package>
<package type="rpm">
  <name>AlignPrimer-debugsource</name>
  <arch>x86_64</arch>
  <version epoch="0" ver="1.0" rel="4.19"/>
  <checksum type="sha256" pkgid="YES">8833c44695bc364c64f99729afd0f7e60a7d6a33405e9f6f679a68e65fc4f040</checksum>
  <summary>Debug sources for package AlignPrimer</summary>
  <description>This package provides debug sources for package AlignPrimer.
Debug sources are useful when developing applications that use this
package or when debugging this package.</description>
  <packager></packager>
  <url>https://sites.google.com/site/geraldweberufmg/AlignPrimer</url>
  <time file="1640974251" build="1640974248"/>
  <size package="57860" installed="219516" archive="225932"/>
  <location href="x86_64/AlignPrimer-debugsource-1.0-4.19.x86_64.rpm"/>
  <format>
    <rpm:license>GPL-3.0</rpm:license>
    <rpm:vendor>obs://build.opensuse.org/home:drgweber</rpm:vendor>
    <rpm:group>Development/Debug</rpm:group>
    <rpm:buildhost>build84</rpm:buildhost>
    <rpm:sourcerpm>AlignPrimer-1.0-4.19.src.rpm</rpm:sourcerpm>
    <rpm:header-range start="4664" end="11780"/>
    <rpm:provides>
      <rpm:entry name="AlignPrimer-debugsource" flags="EQ" epoch="0" ver="1.0" rel="4.19"/>
      <rpm:entry name="AlignPrimer-debugsource(x86-64)" flags="EQ" epoch="0" ver="1.0" rel="4.19"/>
    </rpm:provides>
  </format>
</package>
<package type="rpm">
  <name>TfReg</name>
  <arch>src</arch>
  <version epoch="0" ver="8.1" rel="1.1.1"/>
  <checksum type="sha256" pkgid="YES">2a3bd014efa306a7607b40f1f65c941b1ec70a1a929598a887ad28b97a29925c</checksum>
  <summary>Mesoscopic models for DNA and RNA</summary>
  <description>TfReg implements the calculation of the mesoscopic Peyrard-Bishop Hamiltonians to obtain some
physical properties of DNA and RNA duplexes. The method uses the transfer matrix
technique for the calculation of the classical partition function.
Also, TfReg calculates the regression of experimental versus predicted melting temperatures using the
equivalent melting index.
Available parameter files cover AT and CG bases for DNA; AU, CG and GU for RNA; single group-I bulges for RNA;
Cy3 and Cy5 attached to DNA; TNA; LNA.</description>
  <packager></packager>
  <url>https://sites.google.com/site/geraldweberufmg/tfreg</url>
  <time file="1762967972" build="1762967965"/>
  <size package="6682902" installed="6684985" archive="6685364"/>
  <location href="src/TfReg-8.1-1.1.1.src.rpm"/>
  <format>
    <rpm:license>GPL-3.0</rpm:license>
    <rpm:vendor>obs://build.opensuse.org/home:drgweber</rpm:vendor>
    <rpm:group>Productivity/Scientific/Physics</rpm:group>
    <rpm:buildhost>i03-ch1a</rpm:buildhost>
    <rpm:sourcerpm></rpm:sourcerpm>
    <rpm:header-range start="4504" end="9628"/>
    <rpm:requires>
      <rpm:entry name="blas"/>
      <rpm:entry name="boost-devel"/>
      <rpm:entry name="boost-filesystem"/>
      <rpm:entry name="gcc-c++"/>
      <rpm:entry name="gcc-gfortran"/>
      <rpm:entry name="gsl"/>
      <rpm:entry name="gsl-devel"/>
      <rpm:entry name="lapack"/>
      <rpm:entry name="lapack-devel"/>
      <rpm:entry name="zlib-devel"/>
    </rpm:requires>
  </format>
</package>
<package type="rpm">
  <name>TfReg</name>
  <arch>x86_64</arch>
  <version epoch="0" ver="8.1" rel="1.1.1"/>
  <checksum type="sha256" pkgid="YES">b11a0ebde32d2390679b5b1d212cc1e966cdf5a3e1e3a33c1fb441d1c1979569</checksum>
  <summary>Mesoscopic models for DNA and RNA</summary>
  <description>TfReg implements the calculation of the mesoscopic Peyrard-Bishop Hamiltonians to obtain some
physical properties of DNA and RNA duplexes. The method uses the transfer matrix
technique for the calculation of the classical partition function.
Also, TfReg calculates the regression of experimental versus predicted melting temperatures using the
equivalent melting index.
Available parameter files cover AT and CG bases for DNA; AU, CG and GU for RNA; single group-I bulges for RNA;
Cy3 and Cy5 attached to DNA; TNA; LNA.</description>
  <packager></packager>
  <url>https://sites.google.com/site/geraldweberufmg/tfreg</url>
  <time file="1762967972" build="1762967965"/>
  <size package="8088848" installed="24210508" archive="24324572"/>
  <location href="x86_64/TfReg-8.1-1.1.1.x86_64.rpm"/>
  <format>
    <rpm:license>GPL-3.0</rpm:license>
    <rpm:vendor>obs://build.opensuse.org/home:drgweber</rpm:vendor>
    <rpm:group>Productivity/Scientific/Physics</rpm:group>
    <rpm:buildhost>i03-ch1a</rpm:buildhost>
    <rpm:sourcerpm>TfReg-8.1-1.1.1.src.rpm</rpm:sourcerpm>
    <rpm:header-range start="4504" end="109572"/>
    <rpm:provides>
      <rpm:entry name="TfReg" flags="EQ" epoch="0" ver="8.1" rel="1.1.1"/>
      <rpm:entry name="TfReg(x86-64)" flags="EQ" epoch="0" ver="8.1" rel="1.1.1"/>
    </rpm:provides>
    <rpm:requires>
      <rpm:entry name="/bin/bash"/>
      <rpm:entry name="/usr/bin/perl"/>
      <rpm:entry name="libboost_filesystem.so.1.66.0()(64bit)"/>
      <rpm:entry name="libboost_iostreams.so.1.66.0()(64bit)"/>
      <rpm:entry name="libboost_regex.so.1.66.0()(64bit)"/>
      <rpm:entry name="libboost_system.so.1.66.0()(64bit)"/>
      <rpm:entry name="libgcc_s.so.1()(64bit)"/>
      <rpm:entry name="libgcc_s.so.1(GCC_3.0)(64bit)"/>
      <rpm:entry name="libgsl.so.23()(64bit)"/>
      <rpm:entry name="libgslcblas.so.0()(64bit)"/>
      <rpm:entry name="liblapack.so.3()(64bit)"/>
      <rpm:entry name="libm.so.6()(64bit)"/>
      <rpm:entry name="libm.so.6(GLIBC_2.2.5)(64bit)"/>
      <rpm:entry name="libstdc++.so.6()(64bit)"/>
      <rpm:entry name="libstdc++.so.6(CXXABI_1.3)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(CXXABI_1.3.8)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4.11)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4.15)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4.20)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4.21)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4.9)(64bit)"/>
      <rpm:entry name="libz.so.1()(64bit)"/>
      <rpm:entry name="rtld(GNU_HASH)"/>
      <rpm:entry name="libc.so.6(GLIBC_2.14)(64bit)"/>
    </rpm:requires>
    <file>/usr/bin/mesoscopic-potentials</file>
    <file>/usr/bin/tfreg</file>
    <file>/usr/bin/tfreg-salt-regression.pl</file>
  </format>
</package>
<package type="rpm">
  <name>VarGibbs</name>
  <arch>src</arch>
  <version epoch="0" ver="4.1" rel="1.1"/>
  <checksum type="sha256" pkgid="YES">a852f8b8e906628466bb1dbde5b90122650fd2356217134d2dec5ef8478b27a3</checksum>
  <summary>Calculation of DNA nearest-neighbour thermodynamic parameters</summary>
  <description>Numerical method for calculating nearest-neighbour (NN) entropy and enthalpy parameters
from nucleotide melting temperatures.</description>
  <packager></packager>
  <url>https://sites.google.com/site/geraldweberufmg/vargibbs</url>
  <time file="1698358731" build="1698358725"/>
  <size package="9013812" installed="9015653" archive="9016036"/>
  <location href="src/VarGibbs-4.1-1.1.src.rpm"/>
  <format>
    <rpm:license>GPL-3.0</rpm:license>
    <rpm:vendor>obs://build.opensuse.org/home:drgweber</rpm:vendor>
    <rpm:group>Productivity/Scientific/Physics</rpm:group>
    <rpm:buildhost>h02-ch1a</rpm:buildhost>
    <rpm:sourcerpm></rpm:sourcerpm>
    <rpm:header-range start="4664" end="8112"/>
    <rpm:requires>
      <rpm:entry name="boost-devel"/>
      <rpm:entry name="gcc-c++"/>
      <rpm:entry name="gsl-devel"/>
      <rpm:entry name="zlib-devel"/>
    </rpm:requires>
  </format>
</package>
<package type="rpm">
  <name>VarGibbs</name>
  <arch>x86_64</arch>
  <version epoch="0" ver="4.1" rel="1.1"/>
  <checksum type="sha256" pkgid="YES">63bf0235531e5e7427e18b108258f12a9af761e5e5f117e9f488ba4a4c6df14c</checksum>
  <summary>Calculation of DNA nearest-neighbour thermodynamic parameters</summary>
  <description>Numerical method for calculating nearest-neighbour (NN) entropy and enthalpy parameters
from nucleotide melting temperatures.</description>
  <packager></packager>
  <url>https://sites.google.com/site/geraldweberufmg/vargibbs</url>
  <time file="1698358731" build="1698358725"/>
  <size package="9937592" installed="30526282" archive="31029784"/>
  <location href="x86_64/VarGibbs-4.1-1.1.x86_64.rpm"/>
  <format>
    <rpm:license>GPL-3.0</rpm:license>
    <rpm:vendor>obs://build.opensuse.org/home:drgweber</rpm:vendor>
    <rpm:group>Productivity/Scientific/Physics</rpm:group>
    <rpm:buildhost>h02-ch1a</rpm:buildhost>
    <rpm:sourcerpm>VarGibbs-4.1-1.1.src.rpm</rpm:sourcerpm>
    <rpm:header-range start="4664" end="436440"/>
    <rpm:provides>
      <rpm:entry name="VarGibbs" flags="EQ" epoch="0" ver="4.1" rel="1.1"/>
      <rpm:entry name="VarGibbs(x86-64)" flags="EQ" epoch="0" ver="4.1" rel="1.1"/>
    </rpm:provides>
    <rpm:requires>
      <rpm:entry name="/bin/bash"/>
      <rpm:entry name="gsl"/>
      <rpm:entry name="libboost_filesystem.so.1.66.0()(64bit)"/>
      <rpm:entry name="libboost_iostreams.so.1.66.0()(64bit)"/>
      <rpm:entry name="libboost_regex.so.1.66.0()(64bit)"/>
      <rpm:entry name="libboost_system.so.1.66.0()(64bit)"/>
      <rpm:entry name="libgcc_s.so.1()(64bit)"/>
      <rpm:entry name="libgcc_s.so.1(GCC_3.0)(64bit)"/>
      <rpm:entry name="libgsl.so.23()(64bit)"/>
      <rpm:entry name="libgslcblas.so.0()(64bit)"/>
      <rpm:entry name="libm.so.6()(64bit)"/>
      <rpm:entry name="libm.so.6(GLIBC_2.2.5)(64bit)"/>
      <rpm:entry name="libstdc++.so.6()(64bit)"/>
      <rpm:entry name="libstdc++.so.6(CXXABI_1.3)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(CXXABI_1.3.8)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4.11)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4.15)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4.20)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4.21)(64bit)"/>
      <rpm:entry name="libstdc++.so.6(GLIBCXX_3.4.9)(64bit)"/>
      <rpm:entry name="libz.so.1()(64bit)"/>
      <rpm:entry name="rtld(GNU_HASH)"/>
      <rpm:entry name="libc.so.6(GLIBC_2.14)(64bit)"/>
    </rpm:requires>
    <file>/usr/bin/vargibbs</file>
  </format>
</package>
</metadata>